PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495792.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 549aa    MW: 64187.3 Da    PI: 6.3653
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.8e-16105176278
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                     Wt++e+l+L+++r++me+++ +       We+vs+k++e g++rs+ +Ckek+e+ ++ + +i+ +++++++++ ++
  XP_004495792.1 105 WTNDEILTLLKIRSNMESWFPDF-----TWEHVSRKLAEVGYKRSADKCKEKFEEESRFFNNININNNNNNNNNNNN 176
                     ********************998.....9**********************************99999986666554 PP

2trihelix94.11.4e-29412498186
        trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k+evlaLi++r + +++ +++k   k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ ++kr s +s+tcpyf+ l 
  XP_004495792.1 412 RWPKDEVLALINLRCNNNNNNNEEKegNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKR-SLDSRTCPYFHLLS 498
                     8**************99999998654499*******************************************8.9999*******875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-11103171No hitNo description
PROSITE profilePS500906.272104156IPR017877Myb-like domain
PfamPF138373.2E-19411498No hitNo description
CDDcd122031.36E-20411478No hitNo description
PROSITE profilePS500906.829412471IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSSL PLHLPFPLSS TPNNTTFPTF DPYNQQNHPS HHHQIPLQVQ  60
PNLLHPLHHQ KDEDKQENTS VTTPSMNFQI ERDHRQILPQ LVDPWTNDEI LTLLKIRSNM  120
ESWFPDFTWE HVSRKLAEVG YKRSADKCKE KFEEESRFFN NININNNNNN NNNNNNNNYG  180
KSYRFVTELE ELYNNNNNNN NNQVVESEKP SEGKDKMDHD EDSRNDDLLV TKKKEESVTN  240
EERKRKRGEN RFEVFKGFCE SVVKKMIEQQ EEMHNKLIED MLKRDEEKFE REEAWKKQEM  300
EKMNKELELM AREQAIAGDR QANIIEFLNK FSTTKVTTLL NSSIILHSQN PNIPSSIDKT  360
IQPTPSFENP SSNLPSKKNP NISSLDSVPL VKNSRSSYSN LIINEKEDIG RRWPKDEVLA  420
LINLRCNNNN NNNEEKEGNK APLWERISQG MLELGYKRSA KRCKEKWENI NKYFRKTKDA  480
NRKRSLDSRT CPYFHLLSNL YNQGKLVLQS DQNQESNLNV QENIQDQIEV APADENKGGE  540
SSQVGPACW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231246KKKEESVTNEERKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495792.10.0PREDICTED: trihelix transcription factor GTL2-like
TrEMBLG7I6V90.0G7I6V9_MEDTR; Trihelix transcription factor
STRINGGLYMA10G30300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.19e-67Trihelix family protein